深度学习 脑部图像分割

深度学习 脑部图像分割

__author__ = ‘adeb‘

data_path = “./datasets/paper_ultimate_conv/“

general = {
    “source“: “miccai“
    “source_kwargs“: {“mode“: “folder“ “path“: “./datasets/miccai/2/“}
    “file_path“: data_path + “test.h5“
    “perm“: False
    “n_data“: 40000
}

pick_vx = {
    “where“: “anywhere“  # anywhere plane
    “plane“: 100
    “axis“: 1
    “how“: “random“  # all random balanced
}

pick_features = [
    # types: 2Dortho 3D centroid
    {
        “how“: “2Dortho“  # 2Dortho 2DorthoRotated 3D three_patches local_global grid_patches
        “patch_width“: 29
        “axis“: [0 1 2]
        “scale“: 3
    }
    {
        “how“: “2Dortho“  # 2Dortho 2DorthoRotated 3D three_patches local_global grid_patches
        “patch_width“: 29
        “axis“: [0 1 2]
        “scale“: 3
    }
    {
        “how“: “3D“  # 2Dortho 2DorthoRotated 3D three_patches local_global grid_patches
        “patch_width“: 13
        “scale“: 1
    }
    {
        “how“: “centroid“  # 2Dortho 2DorthoRotated 3D three_patches local_global grid_patches
        “n_features“: 134
    }
]

pick_tg = {
    “how“: “center“  # center proportion
}

 属性            大小     日期    时间   名称
----------- ---------  ---------- -----  ----
     目录           0  2015-01-11 17:07  brain_segmentation-master\
     文件         676  2015-01-11 17:07  brain_segmentation-master\.gitignore
     文件          81  2015-01-11 17:07  brain_segmentation-master\.gitmodules
     文件        1172  2015-01-11 17:07  brain_segmentation-master\cfg_testing_data_creation.py
     文件        1175  2015-01-11 17:07  brain_segmentation-master\cfg_training_data_creation.py
     文件       13145  2015-01-11 17:07  brain_segmentation-master\data_brain_parcellation.py
     文件        4808  2015-01-11 17:07  brain_segmentation-master\experiment_brain_parcellation.py
     文件        5028  2015-01-11 17:07  brain_segmentation-master\main_compute_segmentations.py
     文件         578  2015-01-11 17:07  brain_segmentation-master\main_data_generation.py
     文件       58903  2015-01-11 17:07  brain_segmentation-master\matplotlib2tikz.py
     文件       45656  2015-01-11 17:07  brain_segmentation-master\network_brain_parcellation.py
     文件          70  2015-01-11 17:07  brain_segmentation-master\run.sh
     目录           0  2015-01-11 17:07  brain_segmentation-master\side_analysis\
     文件        2980  2015-01-11 17:07  brain_segmentation-master\side_analysis\boundary_weight.py
     文件        3741  2015-01-11 17:07  brain_segmentation-master\side_analysis\experiment_centr.py
     文件        6874  2015-01-11 17:07  brain_segmentation-master\side_analysis\experiment_iterative.py
     文件        5707  2015-01-11 17:07  brain_segmentation-master\side_analysis\experiment_n_data.py
     文件        5646  2015-01-11 17:07  brain_segmentation-master\side_analysis\experiment_n_layers.py
     文件        5537  2015-01-11 17:07  brain_segmentation-master\side_analysis\experiment_size_patch.py
     文件         399  2015-01-11 17:07  brain_segmentation-master\side_analysis\main_analyse_single_file.py
     文件        1706  2015-01-11 17:07  brain_segmentation-master\side_analysis\main_test.py
     文件        4840  2015-01-11 17:07  brain_segmentation-master\side_analysis\main_test_with_centroids.py
     目录           0  2015-01-11 17:07  brain_segmentation-master\spynet\